Publications

2026

2025

  • Impact of stromal maturity and proportion on prognosis and immune landscape in colorectal cancer

    CONCLUSIONS: TSR and DR are independent prognostic factors for cancer-specific survival. SMAPS is a promising prognostic tool that integrates stromal maturity at the invasive margin and stromal proportion in the tumour centre. SMAPS has stronger prognostic value compared to TSR and DR classifications alone. A high stromal proportion and myxoid content are associated with an immunosuppressive microenvironment characterized by lower densities of antitumourigenic immune cells.
  • Urothelium marker UPK2 identifies aggressive colorectal cancers with distinct molecular and histological features

    CONCLUSIONS: UPK2 marks a distinct subset of CRCs with poor prognosis, epithelial-mesenchymal transition, micropapillary growth, and squamous differentiation. These findings may affect the development of targeted therapies in precision medicine.
  • Skin cancer risk in hereditary mixed cancer syndromes

    Hereditary cancer syndromes are genetic conditions that increase an individual's risk for multiple cancer types, often due to mutations that affect critical cellular processes such as DNA repair and cell cycle regulation. Skin cancers, including malignant melanoma (MM), basal cell carcinoma (BCC), squamous cell carcinoma (SCC), and related precancerous lesions may be underrecognized in some hereditary cancer syndromes, as suggested by underlying biological mechanisms and their underreporting in...
  • PTEN status, tumor immune microenvironment, and survival in colorectal cancer

    Phosphatase and tensin homolog (PTEN) is a tumor suppressor involved in cell proliferation, DNA repair, apoptosis, and cell cycle regulation. Its loss has been linked to worse prognosis and poor immune therapy response in several cancers, but findings in colorectal cancer (CRC) have been inconsistent. This study aims to evaluate the prognostic value of PTEN expression and its relationship with the tumor immune microenvironment in two large CRC cohorts (combined N = 2303). PTEN expression was...
  • Constrained hypermutation and absence of TERT promoter mutations in Lynch syndrome-associated urothelial cancer

    Lynch syndrome (LS) is a hereditary condition characterized by defective DNA mismatch repair and a high incidence of several cancers. In this study, we investigate the somatic landscape of LS-associated urothelial cancer (LS-UC) by analyzing 41 tumor and 3 urine samples from 34 patients with LS-UC. We show that telomerase reverse transcriptase (TERT) promoter mutations found in 83% of sporadic UC are almost absent (5%) in LS-UC. Instead, LS-UC carries a 5-methylcytosine-deamination- (CG>TG) and...
  • Significance of Th1 and Th2 Cell Densities and Th1/Th2 Cytokine Profiles in Colorectal Cancer

    CONCLUSIONS: This study supports the prognostic significance of Th1 and Th2 cells in colorectal cancer. Mesenteric serum levels of Th-related cytokines may contribute to or reflect the tumor-associated Th1/Th2 response.
  • Integrative omics approaches to uncover liquid-based cancer-predicting biomarkers in Lynch syndrome

    Lynch syndrome is a genetic cancer-predisposing syndrome caused by pathogenic mutations in DNA mismatch repair (path_MMR) genes. Due to the elevated cancer risk, novel screening methods, alongside current surveillance techniques, could enhance cancer risk stratification. Here we show how bi-omics integration could be utilized to pinpoint potential cancer-predicting biomarkers in Lynch syndrome. We studied which blood-based circulating microRNAs and metabolites could predict Lynch syndrome cancer...
  • Colorectal cancer heterogeneity co-evolves with tumor architecture to determine disease outcome

    Intratumoral heterogeneity, originating from genetic, epigenetic, and phenotypic cellular diversity, is pervasive in cancer. As these heterogeneous states employ diverse mechanisms to promote tumor progression, metastasis, and therapy resistance, emergence of cancer heterogeneity is one of the most significant barriers to curative treatment. Here we leverage deep learning approaches to develop a high-throughput image-analysis paradigm with subcellular resolution that quantifies and predicts...
  • Genome-wide DNA methylation profiles of colorectal tumors in Lynch syndrome and familial adenomatous polyposis

    CONCLUSIONS: Genome-wide DNA methylation changes are an integral part of FAP and LS-associated colorectal tumorigenesis. Occurrence at early stages, even in non-neoplastic colonic mucosa, and increased prevalence with progressive dysplasia suggest a role in tumor development. Overlap of many of the topmost DNA methylation alterations between LS and FAP, and previous reports of their occurrence in sporadic colorectal and other tumors as well, imply their broad biological relevance and possible...
  • Characteristics and significance of γδ T cells in colorectal cancer

    Gamma-delta T cells are a subset of T cells that have features of both innate and adaptive immunity. Their role in cancer remains controversial, since both anti- and protumor functions have been reported. We aimed to shed light on the distinct characteristics of γδ T cells in colorectal cancer (CRC). In two independent cohorts, including 1 687 CRC patients, we identified γδ and αβ T cells with multiplex immunohistochemistry to evaluate their prognostic significance. To further analyze the...

2024

2023

2022

2021